X-Original-To: alpine-devel@mail.alpinelinux.org Delivered-To: alpine-devel@mail.alpinelinux.org Received: from mail.alpinelinux.org (dallas-a1.alpinelinux.org [127.0.0.1]) by mail.alpinelinux.org (Postfix) with ESMTP id 6123EDC06E1 for ; Tue, 26 Jan 2016 14:54:53 +0000 (UTC) Received: from mail-pf0-f175.google.com (mail-pf0-f175.google.com [209.85.192.175]) (using TLSv1 with cipher ECDHE-RSA-RC4-SHA (128/128 bits)) (No client certificate requested) by mail.alpinelinux.org (Postfix) with ESMTPS id 1DCD8DC008F for ; Tue, 26 Jan 2016 14:54:52 +0000 (UTC) Received: by mail-pf0-f175.google.com with SMTP id q63so102750935pfb.1 for ; Tue, 26 Jan 2016 06:54:52 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20120113; h=date:from:to:subject:message-id:references:mime-version :content-type:content-disposition:in-reply-to:user-agent; bh=PzospesFd2sLU/02nVlDIP5dvIkIIo8+85IvRjTKlqg=; b=R/288stdPacniE1jrajzD35LyoQhrCSX59tT/2BJ5sVOQqB0p1z4cBNSO5sQ4ZhHlH E8k/t33XBOYLEXtwgb8EhLKPf4Ig4JYJou7BbSWMEFKMlG56JtLeS8NNusrSxDP7oX2L dhuul1L5zwGRU771P8z/5H5HOx8ZBna3neSVlP44paSan82NN7RNP7IFz/92uxgpjaio TTwWMe3dZWAtS6gkWh2UzykU+DliZoM05Qb6SSMCQmSnhsXGloj9ONfQlaH2j94YO/Mt TXtMRbOAnfspQhITgqqYier22PGrBuR3mzLLmNW4FnQ/SmOYTWiTiKtN8llxMCSjcO1m INUg== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20130820; h=x-gm-message-state:date:from:to:subject:message-id:references :mime-version:content-type:content-disposition:in-reply-to :user-agent; bh=PzospesFd2sLU/02nVlDIP5dvIkIIo8+85IvRjTKlqg=; b=iYz+M7TE3igpvd9zm4W2LFTfkRHyqOQvhDPYMfLiNs7g9piePNiCXj1WZvZmM2XjXu BzUgdR6RT+UR7tMSm1OoLCqFoC3q8QeFGZDzkC/5hfotIe9I467j1WmtMrTZVm8Qdc6I 1mwzppNBV/vvRo2xb/UCPWNtEsvv7/34fZdddSmtiantZ0jXhoa5XhAzOQmm8P2H4Ucp 607aTU3c4d+WB9J9WJD3TRJwF0ueW992ZlwhyjJ40CSm7DOz2d4hDv29Q1wi/sAt7wQl wK2NxQ6uzrHyZ0s4r2NF4ts0Km+HxJD2M55zMnCOiLL1CEM7Tr4arFt2gqFWdC9p7Mxu 4wDg== X-Gm-Message-State: AG10YORIlv0UUzWJ7o3bvicBtLBfr/aLaR3ribiXqxJ2nzTmzyCBXxVWqWhxgORD0FqVPQ== X-Received: by 10.98.42.83 with SMTP id q80mr33923067pfq.19.1453820091406; Tue, 26 Jan 2016 06:54:51 -0800 (PST) Received: from newbook ([50.0.225.136]) by smtp.gmail.com with ESMTPSA id 76sm2455953pfl.36.2016.01.26.06.54.50 for (version=TLS1_2 cipher=ECDHE-RSA-AES128-GCM-SHA256 bits=128/128); Tue, 26 Jan 2016 06:54:50 -0800 (PST) Date: Tue, 26 Jan 2016 06:54:47 -0800 From: Isaac Dunham To: alpine-devel@lists.alpinelinux.org Subject: Re: [alpine-devel] Re: Package request: R Message-ID: <20160126145445.GA23152@newbook> References: X-Mailinglist: alpine-devel Precedence: list List-Id: Alpine Development List-Unsubscribe: List-Post: List-Help: List-Subscribe: MIME-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Disposition: inline In-Reply-To: User-Agent: Mutt/1.5.24 (2015-08-30) X-Virus-Scanned: ClamAV using ClamSMTP On Tue, Jan 26, 2016 at 11:17:55AM -0200, Alba Pompeo wrote: > I tried to compile the source myself, but it appears R doesn't play > well with musl. > Can someone please help? If we can compile from source, then a > packager should easily make an APKBUILD for everyone. I've tried building R for musl in the past; however, that was a few years ago, and it failed some of the tests. (IIRC, I was using gcc/gfortran 4.2 or a 3.4.x-based toolchain.) Because of that, I figured my build was unreliable. Passing 'make test' is an important step, despite being optional (not to mention impossible for cross-compiling). > The error. You missed the command; there's no way to help without it. (It's also good to know what configure options, CFLAGS, and LDFLAGS you used.) There should be something along the lines of with 'gcc ... .o .o ... -l -lc' . > ../unix/system.o: In function `Rf_initialize_R': > /home/albap/R-3.2.3/src/unix/system.c:185: undefined reference to > `__libc_stack_end' > /usr/lib/gcc/x86_64-alpine-linux-musl/5.3.0/../../../../x86_64-alpine-linux-musl/bin/ld: > ../unix/system.o: relocation R_X86_64_PC32 against undefined symbol > `__libc_stack_end' can not be used when making a shared object; > recompile with -fPIC > /usr/lib/gcc/x86_64-alpine-linux-musl/5.3.0/../../../../x86_64-alpine-linux-musl/bin/ld: > final link failed: Bad value > collect2: error: ld returned 1 exit status > > Ciao. > > > On Mon, Jan 25, 2016 at 10:53 PM, Alba Pompeo wrote: > > I like to request the package R from https://www.r-project.org/ > > It's very important for my work in statistics and I would be happy if > > we had it on Alpine. Thanks. > > > > Ciao. > > > --- > Unsubscribe: alpine-devel+unsubscribe@lists.alpinelinux.org > Help: alpine-devel+help@lists.alpinelinux.org > --- > --- Unsubscribe: alpine-devel+unsubscribe@lists.alpinelinux.org Help: alpine-devel+help@lists.alpinelinux.org ---